Plotting

Along with the –plot argument for taurex, there is also an extra program specifically for plotting to PDF from TauREx 3 HDF5 outputs. It is accessed like this:

taurex-plot

A summary of the arguments is given here:

Argument	Alternate name	Input	Description
-h	–help		show this help message and exit
-i	–input	INPUT_FILE	TauREx 3 HDF5 output file
-o	–output-dir	OUTPUT_DIR	Directory to store plots
-T	–title	TITLE	Title of plots (optional)
-p	–prefix	PREFIX	Output filename prefix (optional)
-m	–color-map	CMAP	Matplotlib colormap (optional)
-R	–resolution	RESOLUTION	Resample spectra at resolution
-P	–plot-posteriors		Plot posteriors
-x	–plot-xprofile		Plot molecular profiles
-t	–plot-tpprofile		Plot Temperature profiles
-d	–plot-tau		Plot optical depth contribution
-s	–plot-spectrum		Plot spectrum
-c	–plot-contrib		Plot contrib
-C	–full-contrib		Plot detailed contribs
-a	–all		Plot everythiong